Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
LGG | rs61792271 | chr3:153679499 | C/T | 0 | 403 | 15.13 | 17.07 | 0.23 | KM Plot |
LGG | rs61792272 | chr3:153679705 | G/C | 0 | 403 | 15.13 | 17.07 | 0.23 | KM Plot |
LGG | rs61792303 | chr3:153681098 | G/T | 0 | 404 | 15.15 | 17.07 | 0.23 | KM Plot |
LGG | rs61792305 | chr3:153686731 | G/C | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792306 | chr3:153686732 | A/G | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792307 | chr3:153686977 | G/A | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792308 | chr3:153687653 | C/T | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792309 | chr3:153688037 | C/T | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792310 | chr3:153691223 | T/G | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792312 | chr3:153693444 | T/G | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792313 | chr3:153693616 | T/C | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792314 | chr3:153693655 | G/A | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
LGG | rs61792315 | chr3:153694174 | C/T | 0 | 403 | 15.03 | 16.77 | 0.23 | KM Plot |
LGG | rs61792318 | chr3:153696399 | G/A | 0 | 401 | 14.93 | 17.07 | 0.23 | KM Plot |
LGG | rs61792350 | chr3:153712959 | A/G | 0.000217 | 401 | 15.17 | 17.03 | 8.07 | KM Plot |